Experience and education

Education

• PhD in computer science, 2022, Université Paris-Saclay
• Master’s degree in Bioinformatics, 2018, Université Paris-Saclay
• Bachelor’s degree in Bioinformatics, 2015, Université Paris-Diderot (Paris-Cité)

I came to Paris-Diderot (now called Paris-Cité) to join the training which was then the only Bachelor’s degree in bioinformatics preparing for research and I completed my education in Paris-Saclay. I could see different issues of bioinformatics via internships, from NGS analysis to systems biology via structural bioinformatics, while becoming aware of the challenges of experiment reproducibility, data accessibility and theoretical computer science difficulty.

Experience in bioinformatics

• PhD in computer science (applications in systems biology) – 10/2018 to 09/2022
  Logical inference of Boolean networks from knowledge and observations of cellular differentiation processes.
  @ Université Paris-Saclay, LISN (team BioInfo) &
  @ Institut Curie (Paris), Cancer and Genome (team Computational Systems Biology of Cancer)
  Supervisors: Christine Froidevaux (LISN), Loïc Paulevé (LaBRI), Andrei Zinovyev (Institut Curie)
  slides & thesis

• Internship in systems biology – 6mos. in 2018
  By a logical approach (in ASP), identify Boolean networks modeling cell differentiation.
  @ Université Paris-Saclay, LRI
  Supervisor: Loïc Paulevé

• Internship in structural bioinformatics – 3mos. in 2016
  Study of the structure-function relationship of the human P2RX7 receptor.
  @ Lille Faculty of Pharmacy, LIRIC
  Supervisor: Nicolas Renault

• Internship in NGS analysis – 1,5mo. in 2015
  RNA-seq data analysis and pipeline set up in Galaxy.
  @ Institut Pasteur (Lille)
  Supervisor: Julie Chevalier

• Internship in data integration – 1d/w for 4mos. in 2015
  Create a new biological database to gather information available in public databases linking (human) genes with diseases, metabolic pathways, and proteins.
  @ Université Paris-Diderot (Paris-Cité), MTi
  Supervisor: Karine Audouze

Complementary training

• Research school: Networks and Molecular Biology, 03/2020 - CIRM, Marseille
• CNRS thematic school: Formal Modeling of Biological Regulatory Networks, 06/2019 - Hyères
• Course: Computational Systems Biology of Cancer, 09/2018 - Institut Curie, Paris
• Doctoral school training: Ethics in science - 02/2021
• Doctoral school training: Scientific publication process - 09/2019
• Doctoral school training: Methods for science popularization - 10/2019
• Doctoral school training: The basics for beginning teachers at university - 10/2018