Experience and education

Education

• PhD in computer science, 2022, Université Paris-Saclay
• Master’s degree in Bioinformatics, 2018, Université Paris-Saclay
• Bachelor’s degree in Bioinformatics, 2015, Université Paris-Diderot (Paris-Cité)

I approached different issues of bioinformatics via internships, from NGS analysis to systems biology via structural bioinformatics, while becoming aware of the challenges of experiment reproducibility, data accessibility and theoretical computer science difficulty.

Experience in bioinformatics

• PhD in computer science (applications in systems biology), 2018–2022, thesis & defense
  Logical inference of Boolean networks from knowledge and observations of cellular differentiation processes.
  @ Université Paris-Saclay, LISN & Institut Curie, Cancer and Genome
  Supervisors: Christine Froidevaux (LISN), Loïc Paulevé (LaBRI), Andrei Zinovyev (Institut Curie)

• Internship in systems biology, 2018 (6 months)
  By a logical approach (in ASP), identify Boolean networks modeling cell differentiation.
  @ Université Paris-Saclay, LRI – Supervisor: Loïc Paulevé

• Internship in structural bioinformatics, 2016 (3 months)
  Study of the structure-function relationship of the human P2RX7 receptor.
  @ Lille Faculty of Pharmacy, LIRIC – Supervisor: Nicolas Renault

• Internship in NGS analysis, 2015 (6 weeks)
  RNA-seq data analysis and pipeline set up in Galaxy.
  @ Institut Pasteur (Lille) – Supervisor: Julie Chevalier

• Internship in data integration, 2015 (4 months, 1d/w)
  Create a new biological database to gather information available in public databases linking (human) genes with diseases, metabolic pathways, and proteins.
  @ Université Paris-Diderot (Paris-Cité), MTi – Supervisor: Karine Audouze

Complementary training

• Research school: Networks and Molecular Biology, 03/2020 - CIRM, Marseille
• CNRS thematic school: Formal Modeling of Biological Regulatory Networks, 06/2019 - Hyères
• Course: Computational Systems Biology of Cancer, 09/2018 - Institut Curie, Paris
• Doctoral school training: Ethics in science - 02/2021
• Doctoral school training: Scientific publication process - 09/2019
• Doctoral school training: Methods for science popularization - 10/2019
• Doctoral school training: The basics for beginning teachers at university - 10/2018